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For hg38
BigWig
Peak-call (q < 1E-05)
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For hg19
BigWig
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Peak-call (q < 1E-10)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: E2F1
wikigenes
PDBj
CellType: U-266
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1726518
GSM2132555: U266 E2F1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
E2F1
Cell type
Cell type Class
Blood
Cell type
U-266
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma
Attributes by original data submitter
Sample
source_name
Multiple Myeloma
cell line
U266
input
U266_WCE
treatment
none
barcode
N/A
antibody
anti E2F1
antibody maker
Cell Signaling
antibody catalog number
Cell Signaling #3742
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and chromatin-DNA complexes were isolated with antibody. Libraries were prepared using the Rubicon Thruplex FD library preparation kit (cat#: 400427) per manufacturers instructions.
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
32303813
Reads aligned (%)
90.2
Duplicates removed (%)
12.2
Number of peaks
3249 (qval < 1E-05)
hg19
Number of total reads
32303813
Reads aligned (%)
89.5
Duplicates removed (%)
13.6
Number of peaks
3247 (qval < 1E-05)
Base call quality data from
DBCLS SRA